RTN4RL2 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RTN4RL2

Reticulon 4 receptor like 2. (186 aa)

Predicted Functional Partners:

TMEM25

0.689

ANKRD13B

0.679

LIMS2

0.631

ADGRL2

0.630

ADGRL1

0.630

ADGRL3

0.630

PHYHIP

0.598

GJD4

0.598

NDST3

0.592

RASL11A

0.590

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL1	RTN4RL2	ENSCAFP00000058897	ENSCAFP00000041417	Adhesion G protein-coupled receptor L1; Belongs to the G-protein coupled receptor 2 family.	Reticulon 4 receptor like 2.	0.630
ADGRL2	RTN4RL2	ENSCAFP00000045291	ENSCAFP00000041417	Adhesion G protein-coupled receptor L2; Belongs to the G-protein coupled receptor 2 family.	Reticulon 4 receptor like 2.	0.630
ADGRL3	RTN4RL2	ENSCAFP00000062550	ENSCAFP00000041417	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Reticulon 4 receptor like 2.	0.630
ANKRD13B	RTN4RL2	ENSCAFP00000027973	ENSCAFP00000041417	Ankyrin repeat domain 13B.	Reticulon 4 receptor like 2.	0.679
ANKRD13B	TMEM25	ENSCAFP00000027973	ENSCAFP00000018608	Ankyrin repeat domain 13B.	Transmembrane protein 25.	0.803
GJD4	LIMS2	ENSCAFP00000030748	ENSCAFP00000049889	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	LIM zinc finger domain containing 2.	0.605
GJD4	PHYHIP	ENSCAFP00000030748	ENSCAFP00000013917	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Phytanoyl-CoA 2-hydroxylase interacting protein.	0.622
GJD4	RASL11A	ENSCAFP00000030748	ENSCAFP00000010139	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	RAS like family 11 member A.	0.589
GJD4	RTN4RL2	ENSCAFP00000030748	ENSCAFP00000041417	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Reticulon 4 receptor like 2.	0.598
LIMS2	GJD4	ENSCAFP00000049889	ENSCAFP00000030748	LIM zinc finger domain containing 2.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.605
LIMS2	PHYHIP	ENSCAFP00000049889	ENSCAFP00000013917	LIM zinc finger domain containing 2.	Phytanoyl-CoA 2-hydroxylase interacting protein.	0.605
LIMS2	RASL11A	ENSCAFP00000049889	ENSCAFP00000010139	LIM zinc finger domain containing 2.	RAS like family 11 member A.	0.573
LIMS2	RTN4RL2	ENSCAFP00000049889	ENSCAFP00000041417	LIM zinc finger domain containing 2.	Reticulon 4 receptor like 2.	0.631
NDST3	RTN4RL2	ENSCAFP00000045712	ENSCAFP00000041417	N-deacetylase and N-sulfotransferase 3.	Reticulon 4 receptor like 2.	0.592
PHYHIP	GJD4	ENSCAFP00000013917	ENSCAFP00000030748	Phytanoyl-CoA 2-hydroxylase interacting protein.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.622
PHYHIP	LIMS2	ENSCAFP00000013917	ENSCAFP00000049889	Phytanoyl-CoA 2-hydroxylase interacting protein.	LIM zinc finger domain containing 2.	0.605
PHYHIP	RASL11A	ENSCAFP00000013917	ENSCAFP00000010139	Phytanoyl-CoA 2-hydroxylase interacting protein.	RAS like family 11 member A.	0.585
PHYHIP	RTN4RL2	ENSCAFP00000013917	ENSCAFP00000041417	Phytanoyl-CoA 2-hydroxylase interacting protein.	Reticulon 4 receptor like 2.	0.598
RASL11A	GJD4	ENSCAFP00000010139	ENSCAFP00000030748	RAS like family 11 member A.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.589
RASL11A	LIMS2	ENSCAFP00000010139	ENSCAFP00000049889	RAS like family 11 member A.	LIM zinc finger domain containing 2.	0.573