STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBM41RNA binding motif protein 41. (484 aa)    
Predicted Functional Partners:
SF3B6
Splicing factor 3b subunit 6.
   
 
 0.864
NT5C3A
5'-nucleotidase; Belongs to the pyrimidine 5'-nucleotidase family.
   
  
 0.709
CNOT6L
CCR4-NOT transcription complex subunit 6 like.
   
  
 0.697
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
 
 0.686
CNOT6
CCR4-NOT transcription complex subunit 6.
   
  
 0.682
CNOT2
CCR4-NOT transcription complex subunit 2.
   
  
 0.682
PNPT1
Polyribonucleotide nucleotidyltransferase 1.
   
  
 0.645
SF3A2
Splicing factor 3a subunit 2.
   
 
 0.638
PRPF6
Pre-mRNA processing factor 6.
   
 
 0.628
ENSCAFP00000051572
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
   
 
 0.617
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.