STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTUD4OTU deubiquitinase 4. (1129 aa)    
Predicted Functional Partners:
SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
      
 0.807
RNF216
Ring finger protein 216.
   
 
 0.771
SACS
Sacsin molecular chaperone.
   
  
 0.720
ZNF598
Zinc finger protein 598.
   
 
 0.705
GAN
Gigaxonin.
   
  
 0.681
NKX6-1
NK6 homeobox 1.
      
 0.673
USP7
Ubiquitin specific peptidase 7; Belongs to the peptidase C19 family.
   
 
 0.631
DAPP1
Dual adaptor of phosphotyrosine and 3-phosphoinositides 1.
      
 0.624
SLC35F6
Solute carrier family 35 member F6; May play a role as a nucleotide-sugar transporter.
   
  
 0.565
HOXA10
Homeobox A10.
      
 0.564
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.