STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLIRPSRA stem-loop interacting RNA binding protein. (130 aa)    
Predicted Functional Partners:
LRPPRC
Leucine rich pentatricopeptide repeat containing.
   
 
 0.986
TOMM7
Translocase of outer mitochondrial membrane 7.
   
  
 0.723
NDUFB4
NADH:ubiquinone oxidoreductase subunit B4.
   
    0.710
GUF1
Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.
      
 0.707
TMEM145
Transmembrane protein 145.
      
 0.643
SLU7
SLU7 homolog, splicing factor.
   
 
 0.594
LRRC3
Leucine rich repeat containing 3.
    
 
 0.593
NCL
Nucleolin.
   
 
 0.589
GRSF1
G-rich RNA sequence binding factor 1.
   
 
 0.586
MTPAP
Mitochondrial poly(A) polymerase.
   
 
 0.580
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.