STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDAC6Histone deacetylase 6. (1186 aa)    
Predicted Functional Partners:
CTTN
Cortactin.
    
 
 0.904
HCLS1
Hematopoietic cell-specific Lyn substrate 1.
    
 
 0.874
UBB
Ubiquitin B.
   
 0.837
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.825
ENSCAFP00000050780
Ubiquitin-like domain-containing protein.
    
 0.825
SQSTM1
Sequestosome 1.
   
 
 0.798
HDAC11
Histone deacetylase 11.
    
 
 0.774
NCOR2
Nuclear receptor corepressor 2.
    
 0.764
HDAC8
Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
  
 
0.762
MAPT
Microtubule-associated protein.
    
 
 0.762
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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