STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM8LSM8 homolog, U6 small nuclear RNA associated. (96 aa)    
Predicted Functional Partners:
PRPF4
Pre-mRNA processing factor 4.
   
 
 0.926
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.910
PRPF3
Pre-mRNA processing factor 3.
   
 
 0.902
LSM7
Sm domain-containing protein.
   
 
 0.883
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.877
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
 
 0.850
E2QZ56_CANLF
Uncharacterized protein.
   
 
 0.846
PHF5A
PHD finger protein 5A.
   
 
 0.818
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.816
ENSCAFP00000057917
Sm domain-containing protein.
   
 
 0.816
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.