ZC3H15 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZC3H15

Zinc finger CCCH-type containing 15. (457 aa)

Predicted Functional Partners:

DRG1

0.837

ENSCAFP00000043973

0.837

ENSCAFP00000050736

0.837

ENSCAFP00000064223

0.837

DRG2

0.791

ENSCAFP00000053382

0.770

ENSCAFP00000057628

0.770

RPS12

0.746

BCKDHB

0.738

FAU

0.718

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCKDHB	ZC3H15	ENSCAFP00000004212	ENSCAFP00000054654	Branched chain keto acid dehydrogenase E1 subunit beta.	Zinc finger CCCH-type containing 15.	0.738
DRG1	DRG2	ENSCAFP00000038978	ENSCAFP00000027153	Developmentally regulated GTP binding protein 1.	Developmentally regulated GTP binding protein 2.	0.489
DRG1	FAU	ENSCAFP00000038978	ENSCAFP00000033982	Developmentally regulated GTP binding protein 1.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.453
DRG1	RPS12	ENSCAFP00000038978	ENSCAFP00000000270	Developmentally regulated GTP binding protein 1.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.494
DRG1	ZC3H15	ENSCAFP00000038978	ENSCAFP00000054654	Developmentally regulated GTP binding protein 1.	Zinc finger CCCH-type containing 15.	0.837
DRG2	DRG1	ENSCAFP00000027153	ENSCAFP00000038978	Developmentally regulated GTP binding protein 2.	Developmentally regulated GTP binding protein 1.	0.489
DRG2	ENSCAFP00000043973	ENSCAFP00000027153	ENSCAFP00000043973	Developmentally regulated GTP binding protein 2.	Uncharacterized protein.	0.460
DRG2	ENSCAFP00000050736	ENSCAFP00000027153	ENSCAFP00000050736	Developmentally regulated GTP binding protein 2.	Uncharacterized protein.	0.460
DRG2	ENSCAFP00000053382	ENSCAFP00000027153	ENSCAFP00000053382	Developmentally regulated GTP binding protein 2.	Uncharacterized protein.	0.436
DRG2	ENSCAFP00000057628	ENSCAFP00000027153	ENSCAFP00000057628	Developmentally regulated GTP binding protein 2.	Uncharacterized protein.	0.436
DRG2	ENSCAFP00000064223	ENSCAFP00000027153	ENSCAFP00000064223	Developmentally regulated GTP binding protein 2.	Uncharacterized protein.	0.460
DRG2	FAU	ENSCAFP00000027153	ENSCAFP00000033982	Developmentally regulated GTP binding protein 2.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.446
DRG2	RPS12	ENSCAFP00000027153	ENSCAFP00000000270	Developmentally regulated GTP binding protein 2.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.615
DRG2	ZC3H15	ENSCAFP00000027153	ENSCAFP00000054654	Developmentally regulated GTP binding protein 2.	Zinc finger CCCH-type containing 15.	0.791
ENSCAFP00000043973	DRG2	ENSCAFP00000043973	ENSCAFP00000027153	Uncharacterized protein.	Developmentally regulated GTP binding protein 2.	0.460
ENSCAFP00000043973	FAU	ENSCAFP00000043973	ENSCAFP00000033982	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.453
ENSCAFP00000043973	RPS12	ENSCAFP00000043973	ENSCAFP00000000270	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.494
ENSCAFP00000043973	ZC3H15	ENSCAFP00000043973	ENSCAFP00000054654	Uncharacterized protein.	Zinc finger CCCH-type containing 15.	0.837
ENSCAFP00000050736	DRG2	ENSCAFP00000050736	ENSCAFP00000027153	Uncharacterized protein.	Developmentally regulated GTP binding protein 2.	0.460
ENSCAFP00000050736	FAU	ENSCAFP00000050736	ENSCAFP00000033982	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.453