STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM178BFamily with sequence similarity 178 member B. (364 aa)    
Predicted Functional Partners:
CATSPERB
Cation channel sperm associated auxiliary subunit beta.
      
 0.673
CCDC60
Coiled-coil domain containing 60.
      
 0.603
USP54
Ubiquitin specific peptidase 54.
      
 0.526
RBKS
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
      
 0.520
LRRCC1
Leucine rich repeat and coiled-coil centrosomal protein 1.
      
 0.515
SLC9C1
Solute carrier family 9 member C1.
      
 0.515
MAP2K5
Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily.
      
 0.495
DNAH12
Uncharacterized protein.
      
 0.461
DNAH7
Dynein axonemal heavy chain 7.
      
 0.461
KDM4D
Lysine demethylase 4D.
      
 0.454
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.