STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAFP00000060538Uncharacterized protein. (125 aa)    
Predicted Functional Partners:
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
    
 
 0.762
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
    
 
 0.651
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
    
 
 0.628
ASNSD1
Glutamine amidotransferase type-2 domain-containing protein.
      
 0.487
MFSD6
Major facilitator superfamily domain containing 6.
      
 0.478
MFSD13A
Major facilitator superfamily domain containing 13A.
      
 0.468
FAM110B
Family with sequence similarity 110 member B.
      
 0.467
WDR75
WD repeat domain 75.
      
 0.465
ZMIZ2
Zinc finger MIZ-type containing 2.
      
 0.463
SLC37A1
Solute carrier family 37 member 1.
      
 0.463
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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