Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LSM1 | LSM2 | ENSCAFP00000009190 | ENSCAFP00000066531 | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | Sm domain-containing protein. | 0.987 |
| LSM1 | LSM3 | ENSCAFP00000009190 | ENSCAFP00000050059 | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.946 |
| LSM1 | LSM4-2 | ENSCAFP00000009190 | ENSCAFP00000061431 | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.954 |
| LSM1 | LSM6 | ENSCAFP00000009190 | ENSCAFP00000046724 | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. | 0.998 |
| LSM1 | LSM7 | ENSCAFP00000009190 | ENSCAFP00000028692 | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | Sm domain-containing protein. | 0.997 |
| LSM1 | SNRPD1 | ENSCAFP00000009190 | ENSCAFP00000026957 | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. | 0.551 |
| LSM2 | LSM1 | ENSCAFP00000066531 | ENSCAFP00000009190 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | 0.987 |
| LSM2 | LSM3 | ENSCAFP00000066531 | ENSCAFP00000050059 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.982 |
| LSM2 | LSM4-2 | ENSCAFP00000066531 | ENSCAFP00000061431 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.921 |
| LSM2 | LSM6 | ENSCAFP00000066531 | ENSCAFP00000046724 | Sm domain-containing protein. | LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. | 0.994 |
| LSM2 | LSM7 | ENSCAFP00000066531 | ENSCAFP00000028692 | Sm domain-containing protein. | Sm domain-containing protein. | 0.994 |
| LSM2 | PRPF3 | ENSCAFP00000066531 | ENSCAFP00000017399 | Sm domain-containing protein. | Pre-mRNA processing factor 3. | 0.941 |
| LSM2 | PRPF31 | ENSCAFP00000066531 | ENSCAFP00000003947 | Sm domain-containing protein. | Nop domain-containing protein. | 0.938 |
| LSM2 | PRPF6 | ENSCAFP00000066531 | ENSCAFP00000055477 | Sm domain-containing protein. | Pre-mRNA processing factor 6. | 0.938 |
| LSM2 | PRPF8 | ENSCAFP00000066531 | ENSCAFP00000028357 | Sm domain-containing protein. | Pre-mRNA processing factor 8. | 0.921 |
| LSM2 | SNRPD1 | ENSCAFP00000066531 | ENSCAFP00000026957 | Sm domain-containing protein. | Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. | 0.948 |
| LSM3 | LSM1 | ENSCAFP00000050059 | ENSCAFP00000009190 | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. | 0.946 |
| LSM3 | LSM2 | ENSCAFP00000050059 | ENSCAFP00000066531 | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | Sm domain-containing protein. | 0.982 |
| LSM3 | LSM4-2 | ENSCAFP00000050059 | ENSCAFP00000061431 | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.916 |
| LSM3 | LSM6 | ENSCAFP00000050059 | ENSCAFP00000046724 | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. | 0.980 |
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