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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTCD3Pentatricopeptide repeat domain-containing protein 3, mitochondrial isoform X1. (686 aa)    
Predicted Functional Partners:
MRPS31
28S ribosomal protein S31, mitochondrial isoform X1.
    
 0.999
MRPS5
28S ribosomal protein S5, mitochondrial isoform X2; Belongs to the universal ribosomal protein uS5 family.
   
 0.999
DAP3
28S ribosomal protein S29, mitochondrial isoform X2.
   
 0.998
AURKAIP1
Aurora kinase A-interacting protein.
    
 0.998
MRPS27
28S ribosomal protein S27, mitochondrial isoform X1.
   
 0.998
MRPS9
28S ribosomal protein S9, mitochondrial isoform X1; Belongs to the universal ribosomal protein uS9 family.
   
 0.998
CHCHD1
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1.
    
 0.998
MRPS15
28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.
   
 0.998
MRPS22
28S ribosomal protein S22, mitochondrial.
   
 0.998
MRPS10
28S ribosomal protein S10, mitochondrial.
    
 0.998
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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