Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC112932544Collagen alpha-4(VI) chain-like. (2000 aa)    
Predicted Functional Partners:
ITGA9
Integrin alpha-9; Belongs to the integrin alpha chain family.
    
 0.849
ITGB8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.815
ITGA2B
Integrin alpha-IIb; Belongs to the integrin alpha chain family.
    
 0.815
ITGA6
Integrin alpha-6 isoform X1; Belongs to the integrin alpha chain family.
    
 0.814
ITGA1
Integrin alpha-1; Belongs to the integrin alpha chain family.
   
 0.807
ITGA8
Integrin alpha-8; Belongs to the integrin alpha chain family.
    
 0.796
ITGA11
Integrin alpha-11; Belongs to the integrin alpha chain family.
    
 0.796
ITGB6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.796
ITGA7
Integrin alpha-7 isoform X1; Belongs to the integrin alpha chain family.
    
 0.796
ITGA10
Integrin alpha-10 isoform X1; Belongs to the integrin alpha chain family.
    
 0.795
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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