UBE3C protein (Vulpes vulpes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBE3C

Ubiquitin-protein ligase E3C. (1165 aa)

Predicted Functional Partners:

UBE2D3

0.810

TRIP12

0.803

SLC30A9

0.769

PSMD14

0.681

UBE2D1

0.665

ENSVVUP00000042833

0.659

OTUD3

0.639

LOC112910913

0.619

UBC

0.619

TULP4

0.607

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSVVUP00000042833	LOC112910913	ENSVVUP00000042833	ENSVVUP00000033800	annotation not available	Ubiquitin-like.	0.703
ENSVVUP00000042833	PSMD14	ENSVVUP00000042833	ENSVVUP00000025420	annotation not available	26S proteasome non-ATPase regulatory subunit 14.	0.425
ENSVVUP00000042833	TRIP12	ENSVVUP00000042833	ENSVVUP00000035723	annotation not available	E3 ubiquitin-protein ligase TRIP12 isoform X2.	0.807
ENSVVUP00000042833	UBC	ENSVVUP00000042833	ENSVVUP00000035962	annotation not available	polyubiquitin-C.	0.703
ENSVVUP00000042833	UBE3C	ENSVVUP00000042833	ENSVVUP00000003264	annotation not available	Ubiquitin-protein ligase E3C.	0.659
LOC112910913	ENSVVUP00000042833	ENSVVUP00000033800	ENSVVUP00000042833	Ubiquitin-like.	annotation not available	0.703
LOC112910913	OTUD3	ENSVVUP00000033800	ENSVVUP00000041396	Ubiquitin-like.	OTU domain-containing protein 3.	0.565
LOC112910913	PSMD14	ENSVVUP00000033800	ENSVVUP00000025420	Ubiquitin-like.	26S proteasome non-ATPase regulatory subunit 14.	0.940
LOC112910913	TRIP12	ENSVVUP00000033800	ENSVVUP00000035723	Ubiquitin-like.	E3 ubiquitin-protein ligase TRIP12 isoform X2.	0.828
LOC112910913	UBE2D1	ENSVVUP00000033800	ENSVVUP00000011282	Ubiquitin-like.	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.781
LOC112910913	UBE2D3	ENSVVUP00000033800	ENSVVUP00000012659	Ubiquitin-like.	Ubiquitin conjugating enzyme E2 D3.	0.914
LOC112910913	UBE3C	ENSVVUP00000033800	ENSVVUP00000003264	Ubiquitin-like.	Ubiquitin-protein ligase E3C.	0.619
OTUD3	LOC112910913	ENSVVUP00000041396	ENSVVUP00000033800	OTU domain-containing protein 3.	Ubiquitin-like.	0.565
OTUD3	UBC	ENSVVUP00000041396	ENSVVUP00000035962	OTU domain-containing protein 3.	polyubiquitin-C.	0.565
OTUD3	UBE2D3	ENSVVUP00000041396	ENSVVUP00000012659	OTU domain-containing protein 3.	Ubiquitin conjugating enzyme E2 D3.	0.612
OTUD3	UBE3C	ENSVVUP00000041396	ENSVVUP00000003264	OTU domain-containing protein 3.	Ubiquitin-protein ligase E3C.	0.639
PSMD14	ENSVVUP00000042833	ENSVVUP00000025420	ENSVVUP00000042833	26S proteasome non-ATPase regulatory subunit 14.	annotation not available	0.425
PSMD14	LOC112910913	ENSVVUP00000025420	ENSVVUP00000033800	26S proteasome non-ATPase regulatory subunit 14.	Ubiquitin-like.	0.940
PSMD14	UBC	ENSVVUP00000025420	ENSVVUP00000035962	26S proteasome non-ATPase regulatory subunit 14.	polyubiquitin-C.	0.940
PSMD14	UBE2D1	ENSVVUP00000025420	ENSVVUP00000011282	26S proteasome non-ATPase regulatory subunit 14.	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family.	0.425