Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
LMBR1Limb region 1 protein homolog isoform X1; Belongs to the LIMR family. (501 aa)    
Predicted Functional Partners:
EPRS1
Bifunctional glutamate/proline--tRNA ligase isoform X2.
    
 
 0.665
WNT8B
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
      
 0.616
SLC35F3
Putative thiamine transporter SLC35F3 isoform X3.
      
 0.615
SIGMAR1
Sigma non-opioid intracellular receptor 1.
    
 
 0.584
FAM210B
Protein FAM210B, mitochondrial.
      
 0.576
TSEN2
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
      
 0.575
QSOX2
Sulfhydryl oxidase.
    
 
 0.572
RNF32
RING finger protein 32.
    
 
 0.551
MCTP1
Multiple C2 and transmembrane domain-containing protein 1 isoform X2.
      
 0.548
MB21D2
Protein MB21D2.
      
 0.540
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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