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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZC3HAV1LLOW QUALITY PROTEIN: zinc finger CCCH-type antiviral protein 1-like. (278 aa)    
Predicted Functional Partners:
SAMD4A
Protein Smaug homolog 1 isoform X1.
   
  
 0.565
ZC3H12B
Probable ribonuclease ZC3H12B.
    
 
 0.529
RPP25
Ribonuclease P protein subunit p25.
      
 0.524
TSEN2
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
      
 0.520
RBM26
RNA-binding protein 26 isoform X3.
   
  
 0.504
RC3H2
Roquin-2 isoform X1.
    
 
 0.477
MKRN2
Probable E3 ubiquitin-protein ligase makorin-2.
   
 
 0.472
ZC3H12D
Probable ribonuclease ZC3H12D.
    
 
 0.467
ZC3H12C
Probable ribonuclease ZC3H12C.
    
 
 0.466
ZC3H15
Zinc finger CCCH domain-containing protein 15.
      
 0.456
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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