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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GRSF1G-rich sequence factor 1. (344 aa)    
Predicted Functional Partners:
MGME1
Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity but is also capable of endoduclease activity on linear substrates. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair, possibly via the processing of displaced DNA containing Okazaki fragments during RNA- primed DNA synthesis on the lagging strand or via processing of DNA flaps during long-patch base excision repair; Belongs to the MGME1 family.
    
 
 0.742
CNIH1
Protein cornichon homolog 1 isoform X2.
      
 0.730
DDX28
Probable ATP-dependent RNA helicase DDX28.
   
 0.650
SLIRP
SRA stem-loop-interacting RNA-binding protein, mitochondrial.
   
 0.631
FASTKD2
FAST kinase domain-containing protein 2, mitochondrial.
    
 
 0.620
SURF6
Surfeit locus protein 6.
    
 
 0.616
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 0.610
DHX30
LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase DHX30.
    
 
 0.608
IGBP1
Immunoglobulin-binding protein 1.
      
 0.607
TRMT10C
tRNA methyltransferase 10 homolog C.
   
 
 0.595
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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