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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM88BTransmembrane protein 88B. (178 aa)    
Predicted Functional Partners:
PXDC1
PX domain-containing protein 1 isoform X1.
      
 0.521
RGSL1
Regulator of G-protein signaling protein-like.
      
 0.516
GPCPD1
Glycerophosphocholine phosphodiesterase GPCPD1 isoform X1.
      
 0.515
TAF8
Transcription initiation factor TFIID subunit 8 isoform X1.
      
 0.514
MAD2L1BP
MAD2L1-binding protein.
      
 0.509
SNX10
Sorting nexin-10.
      
 0.454
STX12
Syntaxin-12; Belongs to the syntaxin family.
      
 0.450
COMMD10
COMM domain-containing protein 10 isoform X1.
      
 0.448
JAKMIP2
Janus kinase and microtubule-interacting protein 2 isoform X1.
      
 0.442
SOX15
Protein SOX-15.
      
 0.441
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.