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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH19Protocadherin-19 isoform X2. (1098 aa)    
Predicted Functional Partners:
NCKAP1
Nck-associated protein 1 isoform X3.
    
 0.649
NCKAP1L
Nck-associated protein 1-like isoform X1.
    
 0.515
MED12L
Mediator of RNA polymerase II transcription subunit 12-like protein isoform X2.
      
 0.509
QRICH2
Glutamine rich 2.
    
 0.495
KCNT1
Potassium channel subfamily T member 1 isoform X4.
      
 0.481
WDR45B
WD repeat domain phosphoinositide-interacting protein 3 isoform X1.
      
 0.457
LCN15
Lipocalin-15 isoform X2; Belongs to the calycin superfamily. Lipocalin family.
    
 
 0.454
JKAMP
JNK1/MAPK8-associated membrane protein isoform X1.
      
 0.453
EP300
Histone acetyltransferase p300 isoform X1.
   
 
 0.452
CDKL5
Cyclin-dependent kinase-like 5.
      
 0.441
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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