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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR1Swi5-dependent recombination DNA repair protein 1 homolog isoform X1. (230 aa)    
Predicted Functional Partners:
LSM6
U6 snRNA-associated Sm-like protein LSm6.
      
 0.699
MEIOB
Meiosis-specific with OB domain-containing protein.
      
 0.607
PRPF18
pre-mRNA-splicing factor 18 isoform X1.
      
 0.603
SWI5
DNA repair protein SWI5 homolog.
    
 
 0.596
GCC1
GRIP and coiled-coil domain-containing protein 1.
      
 0.508
ZNF608
Zinc finger protein 608 isoform X1.
      
 0.497
XRCC3
DNA repair protein XRCC3.
    
 0.463
ZBTB17
Zinc finger and BTB domain-containing protein 17 isoform X1.
      
 0.459
RAD51B
DNA repair protein RAD51 homolog 2 isoform X3.
    
 0.457
RAD51D
DNA repair protein RAD51 homolog 4 isoform X1.
    
 0.457
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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