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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP48U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (340 aa)    
Predicted Functional Partners:
SNRNP25
U11/U12 small nuclear ribonucleoprotein 25 kDa protein.
     
 0.977
LOC112919020
LOW QUALITY PROTEIN: U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like.
   
 0.949
KMT5A
N-lysine methyltransferase KMT5A isoform X4.
   
 0.949
PDCD7
LOW QUALITY PROTEIN: programmed cell death protein 7.
   
 0.931
ZMAT5
Zinc finger matrin-type protein 5.
    
 0.899
RNPC3
RNA-binding protein 40 isoform X1.
    
 0.876
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA.
    
 0.875
CWC22
pre-mRNA-splicing factor CWC22 homolog isoform X1.
    
 0.863
DHX38
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 0.854
SNRPD3
Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.
    
 0.828
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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