RAMAC protein (Vulpes vulpes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RAMAC

RNMT-activating mRNA cap methyltransferase subunit. (118 aa)

Predicted Functional Partners:

RNMT

0.876

SETX

0.793

NCBP1

0.735

NCBP2

0.674

NCBP2L

0.674

EXOSC10

0.534

TENT4A

0.530

TENT4B

0.530

POLR2B

0.527

PCF11

0.444

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EXOSC10	NCBP1	ENSVVUP00000037951	ENSVVUP00000026836	Exosome component 10.	Nuclear cap-binding protein subunit 1 isoform X1.	0.450
EXOSC10	RAMAC	ENSVVUP00000037951	ENSVVUP00000006591	Exosome component 10.	RNMT-activating mRNA cap methyltransferase subunit.	0.534
EXOSC10	SETX	ENSVVUP00000037951	ENSVVUP00000039837	Exosome component 10.	Probable helicase senataxin isoform X1.	0.545
EXOSC10	TENT4A	ENSVVUP00000037951	ENSVVUP00000024133	Exosome component 10.	Non-canonical poly(A) RNA polymerase PAPD7 isoform X1.	0.687
EXOSC10	TENT4B	ENSVVUP00000037951	ENSVVUP00000024895	Exosome component 10.	LOW QUALITY PROTEIN: non-canonical poly(A) RNA polymerase PAPD5.	0.733
NCBP1	EXOSC10	ENSVVUP00000026836	ENSVVUP00000037951	Nuclear cap-binding protein subunit 1 isoform X1.	Exosome component 10.	0.450
NCBP1	NCBP2	ENSVVUP00000026836	ENSVVUP00000011667	Nuclear cap-binding protein subunit 1 isoform X1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.999
NCBP1	NCBP2L	ENSVVUP00000026836	ENSVVUP00000013312	Nuclear cap-binding protein subunit 1 isoform X1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.966
NCBP1	PCF11	ENSVVUP00000026836	ENSVVUP00000023835	Nuclear cap-binding protein subunit 1 isoform X1.	pre-mRNA cleavage complex 2 protein Pcf11 isoform X1.	0.738
NCBP1	POLR2B	ENSVVUP00000026836	ENSVVUP00000007917	Nuclear cap-binding protein subunit 1 isoform X1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.735
NCBP1	RAMAC	ENSVVUP00000026836	ENSVVUP00000006591	Nuclear cap-binding protein subunit 1 isoform X1.	RNMT-activating mRNA cap methyltransferase subunit.	0.735
NCBP1	RNMT	ENSVVUP00000026836	ENSVVUP00000019679	Nuclear cap-binding protein subunit 1 isoform X1.	mRNA cap guanine-N7 methyltransferase.	0.727
NCBP1	SETX	ENSVVUP00000026836	ENSVVUP00000039837	Nuclear cap-binding protein subunit 1 isoform X1.	Probable helicase senataxin isoform X1.	0.425
NCBP2	NCBP1	ENSVVUP00000011667	ENSVVUP00000026836	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Nuclear cap-binding protein subunit 1 isoform X1.	0.999
NCBP2	PCF11	ENSVVUP00000011667	ENSVVUP00000023835	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	pre-mRNA cleavage complex 2 protein Pcf11 isoform X1.	0.644
NCBP2	POLR2B	ENSVVUP00000011667	ENSVVUP00000007917	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.607
NCBP2	RAMAC	ENSVVUP00000011667	ENSVVUP00000006591	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	RNMT-activating mRNA cap methyltransferase subunit.	0.674
NCBP2	RNMT	ENSVVUP00000011667	ENSVVUP00000019679	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	mRNA cap guanine-N7 methyltransferase.	0.639
NCBP2	SETX	ENSVVUP00000011667	ENSVVUP00000039837	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Probable helicase senataxin isoform X1.	0.549
NCBP2L	NCBP1	ENSVVUP00000013312	ENSVVUP00000026836	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Nuclear cap-binding protein subunit 1 isoform X1.	0.966