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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC86Coiled-coil domain-containing protein 86. (329 aa)    
Predicted Functional Partners:
TM2D1
TM2 domain-containing protein 1.
      
 0.694
MRTO4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
   0.670
UFSP2
Ufm1-specific protease 2.
      
 0.629
VKORC1L1
Vitamin K epoxide reductase complex subunit 1-like protein 1.
      
 0.604
APTX
Aprataxin isoform X1.
      
 0.604
NHP2
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.534
GRWD1
Glutamate-rich WD repeat-containing protein 1.
   
    0.517
BDH2
3-hydroxybutyrate dehydrogenase type 2 isoform X1.
      
 0.499
CCDC136
Coiled-coil domain-containing protein 136 isoform X1.
      
 0.495
TAC3
Tachykinin-3.
      
 0.495
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.