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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC112925775Transcription elongation factor A protein-like 3. (255 aa)    
Predicted Functional Partners:
TCEAL1
Transcription elongation factor A protein-like 1 isoform X1.
   
 
 0.625
BEX3
Protein BEX3.
   
  
 0.620
ARMCX1
Armadillo repeat-containing X-linked protein 1.
   
 0.568
HMGA1
High mobility group protein HMG-I/HMG-Y isoform X2.
      
 0.525
LOC112932169
Neuroendocrine secretory protein 55.
   
 0.495
RAB9B
Ras-related protein Rab-9B.
    
 0.485
ARMC10
Armadillo repeat-containing protein 10.
   
 0.482
TGFB1
Transforming growth factor beta; Belongs to the TGF-beta family.
   
  0.465
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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