Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YAE1Yae1 domain-containing protein 1. (226 aa)    
Predicted Functional Partners:
ABCE1
ATP-binding cassette sub-family E member 1.
    
 
 0.848
ENSVVUP00000006039
annotation not available
   
 
 0.808
LTO1
Oral cancer-overexpressed protein 1.
   
 
 0.808
MMS19
MMS19 nucleotide excision repair protein homolog isoform X2.
    
 
 0.650
PRIM2
DNA primase large subunit.
      
 0.615
ZC3H4
Zinc finger CCCH domain-containing protein 4 isoform X4.
      
 0.603
RSAD1
Radical S-adenosyl methionine domain-containing protein; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L- methionine; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.586
PRIM1
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
      
 0.555
BLZF1
Golgin-45.
      
 0.540
POLR3F
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
   
  
 0.538
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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