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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC39ALOW QUALITY PROTEIN: tetratricopeptide repeat protein 39A. (623 aa)    
Predicted Functional Partners:
ENSVVUP00000024105
annotation not available
      
 0.692
NIPAL2
NIPA-like protein 2 isoform X1.
      
 0.610
ST6GALNAC4
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4; Belongs to the glycosyltransferase 29 family.
      
 0.527
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
      
 0.520
SUDS3
Sin3 histone deacetylase corepressor complex component SDS3.
      
 0.519
PPM1H
Protein phosphatase 1H.
      
 0.519
DCAF5
DDB1- and CUL4-associated factor 5 isoform X1.
      
 0.515
SLC44A1
Choline transporter-like protein 1 isoform X1; Belongs to the CTL (choline transporter-like) family.
      
 0.514
CTDSPL
CTD small phosphatase-like protein.
      
 0.513
SMARCD1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D.
      
 0.497
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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