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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NESNestin; Belongs to the intermediate filament family. (1660 aa)    
Predicted Functional Partners:
OLIG2
Oligodendrocyte transcription factor 2.
      
 0.848
CASP3
Caspase-3 isoform X1; Belongs to the peptidase C14A family.
    
 0.776
TBR1
T-box brain protein 1.
    
 
 0.769
FOXG1
Forkhead box protein G1.
    
 0.761
LOC112909244
Alpha-fetoprotein-like isoform X2.
      
 0.758
DCX
Neuronal migration protein doublecortin isoform X2.
      
 0.753
PAX6
Paired box protein Pax-6 isoform X2.
    
 0.745
MAP2
Microtubule-associated protein.
      
 0.732
POU5F1
POU domain protein.
     
 0.731
SATB2
DNA-binding protein SATB.
    
 0.729
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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