Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX5Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (614 aa)    
Predicted Functional Partners:
DROSHA
Ribonuclease 3 isoform X1.
   
 0.973
RBM39
RNA-binding protein 39 isoform X1.
   
 0.964
DHX9
ATP-dependent RNA helicase A isoform X1.
   
 0.964
DDX17
Probable ATP-dependent RNA helicase DDX17 isoform X1; Belongs to the DEAD box helicase family.
   
 
 0.935
ENSVVUP00000031240
annotation not available
   
 
 0.935
HNRNPK
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 0.897
SF3B1
Splicing factor 3B subunit 1 isoform X1.
   
 0.893
ESR1
Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.
    
 0.892
SPC24
SPC24 component of NDC80 kinetochore complex.
   
    0.892
HNRNPA2B1
Heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1.
   
 0.865
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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