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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZFP36mRNA decay activator protein ZFP36. (330 aa)    
Predicted Functional Partners:
MAPKAPK2
MAP kinase-activated protein kinase 2; Belongs to the protein kinase superfamily.
    
 0.987
TNPO1
Transportin-1.
     
 0.912
XRN1
5'-3' exoribonuclease 1 isoform X2.
    
 0.831
DCP2
m7GpppN-mRNA hydrolase.
   
 0.805
EXOSC8
Exosome complex component RRP43.
   
  0.779
CNOT1
CCR4-NOT transcription complex subunit 1 isoform X1.
    
 0.768
DCP1A
mRNA-decapping enzyme 1A.
    
 0.666
IER3
Radiation-inducible immediate-early gene IEX-1.
   
  
 0.619
YWHAB
14-3-3 protein beta/alpha; Belongs to the 14-3-3 family.
   
 0.615
KHSRP
Far upstream element-binding protein 2.
    
 
 0.615
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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