LMOD1 protein (Vulpes vulpes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LMOD1

Leiomodin-1. (632 aa)

Predicted Functional Partners:

ENSVVUP00000005272

0.841

MYH11

0.841

CALD1

0.739

NEB

0.677

CNN1

0.643

MYL1

0.566

VCL

0.564

RALGPS2

0.531

MYH9

0.515

MYH10

0.515

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CALD1	CNN1	ENSVVUP00000007687	ENSVVUP00000032904	Caldesmon isoform X4.	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	0.518
CALD1	ENSVVUP00000005272	ENSVVUP00000007687	ENSVVUP00000005272	Caldesmon isoform X4.	annotation not available	0.808
CALD1	LMOD1	ENSVVUP00000007687	ENSVVUP00000008424	Caldesmon isoform X4.	Leiomodin-1.	0.739
CALD1	MYH10	ENSVVUP00000007687	ENSVVUP00000040446	Caldesmon isoform X4.	Myosin-10 isoform X7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.487
CALD1	MYH11	ENSVVUP00000007687	ENSVVUP00000026698	Caldesmon isoform X4.	Myosin-11 isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.808
CALD1	MYH9	ENSVVUP00000007687	ENSVVUP00000032514	Caldesmon isoform X4.	Myosin-9 isoform X2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.487
CALD1	VCL	ENSVVUP00000007687	ENSVVUP00000032031	Caldesmon isoform X4.	Vinculin isoform X2.	0.469
CNN1	CALD1	ENSVVUP00000032904	ENSVVUP00000007687	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	Caldesmon isoform X4.	0.518
CNN1	ENSVVUP00000005272	ENSVVUP00000032904	ENSVVUP00000005272	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	annotation not available	0.753
CNN1	LMOD1	ENSVVUP00000032904	ENSVVUP00000008424	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	Leiomodin-1.	0.643
CNN1	MYH10	ENSVVUP00000032904	ENSVVUP00000040446	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	Myosin-10 isoform X7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.444
CNN1	MYH11	ENSVVUP00000032904	ENSVVUP00000026698	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	Myosin-11 isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.753
CNN1	VCL	ENSVVUP00000032904	ENSVVUP00000032031	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	Vinculin isoform X2.	0.499
ENSVVUP00000005272	CALD1	ENSVVUP00000005272	ENSVVUP00000007687	annotation not available	Caldesmon isoform X4.	0.808
ENSVVUP00000005272	CNN1	ENSVVUP00000005272	ENSVVUP00000032904	annotation not available	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	0.753
ENSVVUP00000005272	LMOD1	ENSVVUP00000005272	ENSVVUP00000008424	annotation not available	Leiomodin-1.	0.841
ENSVVUP00000005272	MYL1	ENSVVUP00000005272	ENSVVUP00000012678	annotation not available	Myosin light chain 1/3, skeletal muscle isoform isoform X2.	0.779
ENSVVUP00000005272	VCL	ENSVVUP00000005272	ENSVVUP00000032031	annotation not available	Vinculin isoform X2.	0.526
LMOD1	CALD1	ENSVVUP00000008424	ENSVVUP00000007687	Leiomodin-1.	Caldesmon isoform X4.	0.739
LMOD1	CNN1	ENSVVUP00000008424	ENSVVUP00000032904	Leiomodin-1.	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	0.643