TAF1D protein (Vulpes vulpes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TAF1D

TATA box-binding protein-associated factor RNA polymerase I subunit D. (242 aa)

Predicted Functional Partners:

TAF1A

0.956

TBP

0.932

TAF1C

0.931

RNMT

0.700

TTF1

0.678

TBPL2

0.624

GCNA

0.621

UBN2

0.621

TAF2

0.607

NAALADL1

0.607

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCNA	TAF1D	ENSVVUP00000000229	ENSVVUP00000008964	Acidic repeat-containing protein.	TATA box-binding protein-associated factor RNA polymerase I subunit D.	0.621
GCNA	TBP	ENSVVUP00000000229	ENSVVUP00000009343	Acidic repeat-containing protein.	TATA-box-binding protein isoform X1.	0.465
GCNA	TBPL2	ENSVVUP00000000229	ENSVVUP00000041593	Acidic repeat-containing protein.	TATA box-binding protein-like protein 2.	0.465
NAALADL1	TAF1D	ENSVVUP00000038589	ENSVVUP00000008964	N-acetylated-alpha-linked acidic dipeptidase-like protein.	TATA box-binding protein-associated factor RNA polymerase I subunit D.	0.607
RNMT	TAF1D	ENSVVUP00000019679	ENSVVUP00000008964	mRNA cap guanine-N7 methyltransferase.	TATA box-binding protein-associated factor RNA polymerase I subunit D.	0.700
TAF1A	TAF1C	ENSVVUP00000014049	ENSVVUP00000042623	TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1.	TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X3.	0.933
TAF1A	TAF1D	ENSVVUP00000014049	ENSVVUP00000008964	TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1.	TATA box-binding protein-associated factor RNA polymerase I subunit D.	0.956
TAF1A	TBP	ENSVVUP00000014049	ENSVVUP00000009343	TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1.	TATA-box-binding protein isoform X1.	0.951
TAF1A	TBPL2	ENSVVUP00000014049	ENSVVUP00000041593	TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1.	TATA box-binding protein-like protein 2.	0.813
TAF1A	TTF1	ENSVVUP00000014049	ENSVVUP00000039858	TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1.	Transcription termination factor 1.	0.477
TAF1C	TAF1A	ENSVVUP00000042623	ENSVVUP00000014049	TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X3.	TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1.	0.933
TAF1C	TAF1D	ENSVVUP00000042623	ENSVVUP00000008964	TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X3.	TATA box-binding protein-associated factor RNA polymerase I subunit D.	0.931
TAF1C	TBP	ENSVVUP00000042623	ENSVVUP00000009343	TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X3.	TATA-box-binding protein isoform X1.	0.921
TAF1C	TBPL2	ENSVVUP00000042623	ENSVVUP00000041593	TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X3.	TATA box-binding protein-like protein 2.	0.799
TAF1C	TTF1	ENSVVUP00000042623	ENSVVUP00000039858	TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X3.	Transcription termination factor 1.	0.555
TAF1D	GCNA	ENSVVUP00000008964	ENSVVUP00000000229	TATA box-binding protein-associated factor RNA polymerase I subunit D.	Acidic repeat-containing protein.	0.621
TAF1D	NAALADL1	ENSVVUP00000008964	ENSVVUP00000038589	TATA box-binding protein-associated factor RNA polymerase I subunit D.	N-acetylated-alpha-linked acidic dipeptidase-like protein.	0.607
TAF1D	RNMT	ENSVVUP00000008964	ENSVVUP00000019679	TATA box-binding protein-associated factor RNA polymerase I subunit D.	mRNA cap guanine-N7 methyltransferase.	0.700
TAF1D	TAF1A	ENSVVUP00000008964	ENSVVUP00000014049	TATA box-binding protein-associated factor RNA polymerase I subunit D.	TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1.	0.956
TAF1D	TAF1C	ENSVVUP00000008964	ENSVVUP00000042623	TATA box-binding protein-associated factor RNA polymerase I subunit D.	TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X3.	0.931