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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBPTATA-box-binding protein isoform X1. (324 aa)    
Predicted Functional Partners:
GTF2B
Transcription initiation factor IIB.
   
 0.997
TAF1
Transcription initiation factor TFIID subunit.
    
 0.993
TAF2
Transcription initiation factor TFIID subunit 2 isoform X1.
    
 0.993
TAF11
Transcription initiation factor TFIID subunit 11 isoform X1.
   
 0.989
TAF6
Transcription initiation factor TFIID subunit 6.
   
 0.986
TAF12
Transcription initiation factor TFIID subunit 12.
    
 0.985
BRF1
Transcription factor IIIB 90 kDa subunit isoform X1.
   
 0.980
BDP1
LOW QUALITY PROTEIN: transcription factor TFIIIB component B'' homolog.
    
 0.978
TAF10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.978
TAF5
Transcription initiation factor TFIID subunit 5.
   
 0.970
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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