ASB13 protein (Vulpes vulpes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASB13

Ankyrin repeat and SOCS box protein 13. (276 aa)

Predicted Functional Partners:

ASB6

0.690

ASB7

0.660

CUL5

0.626

SPSB3

0.614

COMMD8

0.587

NEDD8

0.583

COMMD1

0.579

COMMD2

0.573

COMMD4

0.571

ENSVVUP00000005176

0.569

Your Current Organism:

Vulpes vulpes

NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASB13	ASB6	ENSVVUP00000009517	ENSVVUP00000038393	Ankyrin repeat and SOCS box protein 13.	Ankyrin repeat and SOCS box protein 6 isoform X1.	0.690
ASB13	ASB7	ENSVVUP00000009517	ENSVVUP00000019569	Ankyrin repeat and SOCS box protein 13.	Ankyrin repeat and SOCS box protein 7.	0.660
ASB13	COMMD1	ENSVVUP00000009517	ENSVVUP00000016442	Ankyrin repeat and SOCS box protein 13.	COMM domain-containing protein 1.	0.579
ASB13	COMMD2	ENSVVUP00000009517	ENSVVUP00000015171	Ankyrin repeat and SOCS box protein 13.	COMM domain-containing protein 2.	0.573
ASB13	COMMD4	ENSVVUP00000009517	ENSVVUP00000025633	Ankyrin repeat and SOCS box protein 13.	COMM domain-containing protein 4 isoform X2.	0.571
ASB13	COMMD8	ENSVVUP00000009517	ENSVVUP00000032606	Ankyrin repeat and SOCS box protein 13.	COMM domain-containing protein 8.	0.587
ASB13	CUL5	ENSVVUP00000009517	ENSVVUP00000019059	Ankyrin repeat and SOCS box protein 13.	LOW QUALITY PROTEIN: cullin-5; Belongs to the cullin family.	0.626
ASB13	ENSVVUP00000005176	ENSVVUP00000009517	ENSVVUP00000005176	Ankyrin repeat and SOCS box protein 13.	annotation not available	0.569
ASB13	NEDD8	ENSVVUP00000009517	ENSVVUP00000040971	Ankyrin repeat and SOCS box protein 13.	NEDD8.	0.583
ASB13	SPSB3	ENSVVUP00000009517	ENSVVUP00000013596	Ankyrin repeat and SOCS box protein 13.	SPRY domain-containing SOCS box protein 3 isoform X2.	0.614
ASB6	ASB13	ENSVVUP00000038393	ENSVVUP00000009517	Ankyrin repeat and SOCS box protein 6 isoform X1.	Ankyrin repeat and SOCS box protein 13.	0.690
ASB6	ASB7	ENSVVUP00000038393	ENSVVUP00000019569	Ankyrin repeat and SOCS box protein 6 isoform X1.	Ankyrin repeat and SOCS box protein 7.	0.769
ASB6	COMMD1	ENSVVUP00000038393	ENSVVUP00000016442	Ankyrin repeat and SOCS box protein 6 isoform X1.	COMM domain-containing protein 1.	0.573
ASB6	COMMD2	ENSVVUP00000038393	ENSVVUP00000015171	Ankyrin repeat and SOCS box protein 6 isoform X1.	COMM domain-containing protein 2.	0.569
ASB6	COMMD4	ENSVVUP00000038393	ENSVVUP00000025633	Ankyrin repeat and SOCS box protein 6 isoform X1.	COMM domain-containing protein 4 isoform X2.	0.571
ASB6	COMMD8	ENSVVUP00000038393	ENSVVUP00000032606	Ankyrin repeat and SOCS box protein 6 isoform X1.	COMM domain-containing protein 8.	0.587
ASB6	CUL5	ENSVVUP00000038393	ENSVVUP00000019059	Ankyrin repeat and SOCS box protein 6 isoform X1.	LOW QUALITY PROTEIN: cullin-5; Belongs to the cullin family.	0.844
ASB6	ENSVVUP00000005176	ENSVVUP00000038393	ENSVVUP00000005176	Ankyrin repeat and SOCS box protein 6 isoform X1.	annotation not available	0.446
ASB6	NEDD8	ENSVVUP00000038393	ENSVVUP00000040971	Ankyrin repeat and SOCS box protein 6 isoform X1.	NEDD8.	0.580
ASB6	SPSB3	ENSVVUP00000038393	ENSVVUP00000013596	Ankyrin repeat and SOCS box protein 6 isoform X1.	SPRY domain-containing SOCS box protein 3 isoform X2.	0.552