Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
LOC112908923Protein FRG1. (275 aa)    
Predicted Functional Partners:
CWC22
pre-mRNA-splicing factor CWC22 homolog isoform X1.
   
   0.928
PRPF8
pre-mRNA-processing-splicing factor 8.
    
 
 0.784
SNRPD3
Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.
   
 
 0.663
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
   0.656
BCAS2
pre-mRNA-splicing factor SPF27.
   
 
 0.651
PRPF19
pre-mRNA-processing factor 19.
    
   0.627
PLRG1
Pleiotropic regulator 1 isoform X1.
    
   0.626
PPIL1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.626
CDC5L
Cell division cycle 5-like protein.
    
   0.622
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
   0.621
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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