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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN13Calpain-13; Belongs to the peptidase C2 family. (651 aa)    
Predicted Functional Partners:
CAPNS1
Calpain small subunit 1.
   
0.825
YIPF6
Protein YIPF.
      
 0.731
ARHGAP4
Rho GTPase-activating protein 4.
      
 0.714
LCLAT1
Lysocardiolipin acyltransferase 1.
      
 0.710
CAST
Calpastatin isoform X2.
   
 0.702
GABRG2
Gamma-aminobutyric acid receptor subunit gamma-2 isoform X1; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  
 0.612
YPEL5
Protein yippee-like; Belongs to the yippee family.
   
  
 0.608
LOC112915139
Protein yippee-like 5.
   
  
 0.608
ZSCAN12
Zinc finger and SCAN domain-containing protein 12-like.
   
 0.602
ZNF106
Zinc finger protein 106 isoform X1.
   
 0.565
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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