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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZBED1Zinc finger BED domain-containing protein 1. (697 aa)    
Predicted Functional Partners:
POGK
Pogo transposable element with KRAB domain isoform X1.
   
  
 0.751
EMSY
BRCA2-interacting transcriptional repressor EMSY isoform X2.
      
 0.729
PGBD1
piggyBac transposable element-derived protein 1.
    
 
 0.719
GIN1
Gypsy retrotransposon integrase-like protein 1 isoform X1.
   
  
 0.697
NYNRIN
Protein NYNRIN.
   
 
 0.618
LOC112926738
LOW QUALITY PROTEIN: piggyBac transposable element-derived protein 2-like.
    
 
 0.617
NAIF1
Nuclear apoptosis-inducing factor 1.
   
  
 0.616
ZNF862
Zinc finger protein 862 isoform X1.
    
 
 0.611
SH3TC1
LOW QUALITY PROTEIN: SH3 domain and tetratricopeptide repeat-containing protein 1.
      
 0.607
LOC112912850
piggyBac transposable element-derived protein 5-like.
   
 
 0.530
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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