STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP38Ubiquitin carboxyl-terminal hydrolase 38; Belongs to the peptidase C19 family. (1033 aa)    
Predicted Functional Partners:
WDR48
WD repeat-containing protein 48 isoform X1.
   
 0.823
USP39
U4/U6.U5 tri-snRNP-associated protein 2 isoform X1.
   
 
 0.766
MRPL38
39S ribosomal protein L38, mitochondrial.
      
 0.744
DMWD
Dystrophia myotonica WD repeat-containing protein.
   
 0.739
WDR20
WD repeat-containing protein 20 isoform X3.
   
 0.739
RPS27A
ubiquitin-40S ribosomal protein S27a.
    
 0.684
ENSVVUP00000014764
annotation not available
    
 0.684
UBA52
ubiquitin-60S ribosomal protein L40.
    
 0.657
ENSVVUP00000040094
annotation not available
    
 0.657
FANCD2
Fanconi anemia group D2 protein.
    
 0.622
Your Current Organism:
Vulpes vulpes
NCBI taxonomy Id: 9627
Other names: Canis vulpes, V. vulpes, red fox, silver fox
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.