Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C5orf49Chromosome 5 open reading frame 49. (179 aa)    
Predicted Functional Partners:
C9orf116
Chromosome 9 open reading frame 116.
   
 
 0.947
ENSUAMP00000032790
Uncharacterized protein.
   
 
 0.932
C4orf47
Chromosome 4 open reading frame 47.
  
 
 0.923
C11orf1
Chromosome 11 open reading frame 1.
   
 
 0.908
IQUB
IQ motif and ubiquitin domain containing.
    
 
 0.893
CFAP126
Cilia and flagella associated protein 126.
   
 
 0.873
ENSUAMP00000030221
DUF4201 domain-containing protein.
    
 
 0.867
ENSUAMP00000003982
Uncharacterized protein.
   
 
 0.844
CFAP161
Cilia and flagella associated protein 161.
   
 
 0.843
ENSUAMP00000000133
Uncharacterized protein.
    
 
 0.838
Your Current Organism:
Ursus americanus
NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus
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