STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUX1Homeobox protein cut-like. (1416 aa)    
Predicted Functional Partners:
SATB2
DNA-binding protein SATB.
    
 
 0.834
TBR1
T-box brain transcription factor 1.
    
 
 0.746
NES
Nestin; Belongs to the intermediate filament family.
      
 0.734
GFAP
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
      
 0.712
FEZF2
FEZ family zinc finger 2.
    
 
 0.694
ENSUAMP00000000316
Homeobox domain-containing protein.
    
 
 0.639
ENSUAMP00000000397
Paired domain-containing protein.
    
 
 0.639
ENSUAMP00000010249
Uncharacterized protein.
      
 0.633
CASP3
Caspase 3; Belongs to the peptidase C14A family.
      
 0.629
RORB
RAR related orphan receptor B.
      
 0.579
Your Current Organism:
Ursus americanus
NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.