EXTL1 protein (Ursus americanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EXTL1

Exostosin like glycosyltransferase 1; Belongs to the glycosyltransferase 47 family. (668 aa)

Predicted Functional Partners:

EXT2

0.921

ENSUAMP00000002996

0.899

ENSUAMP00000022096

0.899

EXTL2

0.805

CHPF2

0.754

DDIT4L

0.749

MAN2C1

0.709

ENSUAMP00000003205

0.634

ENSUAMP00000034923

0.634

B4GALT1

0.633

Your Current Organism:

Ursus americanus

NCBI taxonomy Id: 9643
Other names: American black bear, Euarctos americanus, U. americanus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4GALT1	CHPF2	ENSUAMP00000033726	ENSUAMP00000029514	Beta-1,4-galactosyltransferase 1.	Hexosyltransferase.	0.536
B4GALT1	ENSUAMP00000003205	ENSUAMP00000033726	ENSUAMP00000003205	Beta-1,4-galactosyltransferase 1.	Uncharacterized protein.	0.504
B4GALT1	ENSUAMP00000034923	ENSUAMP00000033726	ENSUAMP00000034923	Beta-1,4-galactosyltransferase 1.	Uncharacterized protein.	0.504
B4GALT1	EXTL1	ENSUAMP00000033726	ENSUAMP00000034477	Beta-1,4-galactosyltransferase 1.	Exostosin like glycosyltransferase 1; Belongs to the glycosyltransferase 47 family.	0.633
B4GALT1	EXTL2	ENSUAMP00000033726	ENSUAMP00000014165	Beta-1,4-galactosyltransferase 1.	Exostosin like glycosyltransferase 2.	0.476
B4GALT1	MAN2C1	ENSUAMP00000033726	ENSUAMP00000028632	Beta-1,4-galactosyltransferase 1.	Mannosidase alpha class 2C member 1.	0.592
CHPF2	B4GALT1	ENSUAMP00000029514	ENSUAMP00000033726	Hexosyltransferase.	Beta-1,4-galactosyltransferase 1.	0.536
CHPF2	ENSUAMP00000003205	ENSUAMP00000029514	ENSUAMP00000003205	Hexosyltransferase.	Uncharacterized protein.	0.645
CHPF2	ENSUAMP00000034923	ENSUAMP00000029514	ENSUAMP00000034923	Hexosyltransferase.	Uncharacterized protein.	0.645
CHPF2	EXTL1	ENSUAMP00000029514	ENSUAMP00000034477	Hexosyltransferase.	Exostosin like glycosyltransferase 1; Belongs to the glycosyltransferase 47 family.	0.754
CHPF2	EXTL2	ENSUAMP00000029514	ENSUAMP00000014165	Hexosyltransferase.	Exostosin like glycosyltransferase 2.	0.459
CHPF2	MAN2C1	ENSUAMP00000029514	ENSUAMP00000028632	Hexosyltransferase.	Mannosidase alpha class 2C member 1.	0.744
DDIT4L	EXTL1	ENSUAMP00000009934	ENSUAMP00000034477	DNA damage inducible transcript 4 like.	Exostosin like glycosyltransferase 1; Belongs to the glycosyltransferase 47 family.	0.749
ENSUAMP00000002996	EXTL1	ENSUAMP00000002996	ENSUAMP00000034477	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Exostosin like glycosyltransferase 1; Belongs to the glycosyltransferase 47 family.	0.899
ENSUAMP00000002996	EXTL2	ENSUAMP00000002996	ENSUAMP00000014165	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Exostosin like glycosyltransferase 2.	0.887
ENSUAMP00000003205	B4GALT1	ENSUAMP00000003205	ENSUAMP00000033726	Uncharacterized protein.	Beta-1,4-galactosyltransferase 1.	0.504
ENSUAMP00000003205	CHPF2	ENSUAMP00000003205	ENSUAMP00000029514	Uncharacterized protein.	Hexosyltransferase.	0.645
ENSUAMP00000003205	ENSUAMP00000034923	ENSUAMP00000003205	ENSUAMP00000034923	Uncharacterized protein.	Uncharacterized protein.	0.826
ENSUAMP00000003205	EXTL1	ENSUAMP00000003205	ENSUAMP00000034477	Uncharacterized protein.	Exostosin like glycosyltransferase 1; Belongs to the glycosyltransferase 47 family.	0.634
ENSUAMP00000003205	MAN2C1	ENSUAMP00000003205	ENSUAMP00000028632	Uncharacterized protein.	Mannosidase alpha class 2C member 1.	0.634