STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRNP25Small nuclear ribonucleoprotein U11/U12 subunit 25. (159 aa)    
Predicted Functional Partners:
ZMAT5
Zinc finger matrin-type 5.
   
 
 0.966
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
    
 0.964
PHF5A
PHD finger protein 5A.
    
 0.960
ZCRB1
Zinc finger CCHC-type and RNA binding motif containing 1.
     
 0.959
SF3B6
Splicing factor 3b subunit 6.
    
 0.956
SNRNP48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
     
 0.953
RNPC3
RNA binding region (RNP1, RRM) containing 3.
     
 0.946
SF3B5
Splicing factor 3b subunit 5.
   
 
 0.942
ZRSR2
Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2.
     
 0.938
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.937
Your Current Organism:
Salvator merianae
NCBI taxonomy Id: 96440
Other names: Argentine black and white tegu, S. merianae, Tupinambis merianae, ZFMK 89199
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.