STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13BVacuolar protein sorting 13 homolog B. (4024 aa)    
Predicted Functional Partners:
GAK
Cyclin G associated kinase.
    
 
 0.671
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
    
 
 0.617
VPS35
VPS35 retromer complex component.
   
 
 0.535
ZNF462
Zinc finger protein 462.
      
 0.529
ENSSMRP00000007973
annotation not available
      
 0.528
SPG11
SPG11 vesicle trafficking associated, spatacsin.
   
  
 0.489
VPS45
Vacuolar protein sorting 45 homolog.
    
 
 0.486
KIAA1109
KIAA1109.
   
 
 0.467
EXOC2
Exocyst complex component 2.
   
  
 0.452
SYNJ2
Synaptojanin 2.
    
 
 0.447
Your Current Organism:
Salvator merianae
NCBI taxonomy Id: 96440
Other names: Argentine black and white tegu, S. merianae, Tupinambis merianae, ZFMK 89199
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.