STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (430 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.995
EIF4A3
Eukaryotic translation initiation factor 4A3.
   
 0.990
UPF1
UPF1 RNA helicase and ATPase.
    
 0.988
RBM8A
RNA binding motif protein 8A.
    
 0.986
MAGOH
Mago homolog, exon junction complex subunit.
    
 0.984
CASC3
CASC3 exon junction complex subunit.
    
 0.983
ENSSMRP00000018876
annotation not available
    
 0.981
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.976
RANBP2
RAN binding protein 2.
   
 
  0.972
RNPS1
RNA binding protein with serine rich domain 1.
    
 0.969
Your Current Organism:
Salvator merianae
NCBI taxonomy Id: 96440
Other names: Argentine black and white tegu, S. merianae, Tupinambis merianae, ZFMK 89199
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.