STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH20Uncharacterized protein. (952 aa)    
Predicted Functional Partners:
EGFL8
EGF like domain multiple 8.
      
 0.675
BRICD5
BRICHOS domain containing 5.
      
 0.613
SCAPER
S-phase cyclin A associated protein in the ER.
      
 0.605
RAB9B
RAB9B, member RAS oncogene family.
      
 0.527
DDO
D-aspartate oxidase.
      
 0.521
ZPLD1
Zona pellucida like domain containing 1.
      
 0.520
RAB33A
RAB33A, member RAS oncogene family.
      
 0.510
TTC6
Tetratricopeptide repeat domain 6.
   
  
 0.491
SLC25A46
Solute carrier family 25 member 46; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.456
LCN15
Lipocalin 15; Belongs to the calycin superfamily. Lipocalin family.
   
  
 0.456
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.