STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZFYVE27Zinc finger FYVE-type containing 27. (416 aa)    
Predicted Functional Partners:
VAPA
VAMP associated protein A.
    
 
 0.805
PDZD8
PDZ domain containing 8.
      
 0.760
STARD3
StAR related lipid transfer domain containing 3.
   
  
 0.720
SPAST
Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Severing activity is not dependent on tubulin acetylation or detyrosination. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation [...]
    
 
 0.697
VAPB
VAMP associated protein B and C.
    
 
 0.694
RAB11FIP2
RAB11 family interacting protein 2.
      
 0.676
STARD3NL
STARD3 N-terminal like.
   
  
 0.632
MON1A
MON1 homolog A, secretory trafficking associated.
   
  
 0.612
FYCO1
FYVE and coiled-coil domain containing 1.
      
 0.603
ATL1
Atlastin GTPase 1.
    
 
 0.543
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.