G1L2S8_AILME protein (Ailuropoda melanoleuca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

G1L2S8_AILME

Nbas_N domain-containing protein. (376 aa)

Predicted Functional Partners:

ZW10

0.969

RINT1

0.968

STX18

0.946

BNIP1

0.939

LOC100466252

0.938

USE1

0.931

NAPG

0.913

SEC22B

0.902

SCFD2

0.874

COPB2

0.819

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BNIP1	COPB2	ENSAMEP00000011895	ENSAMEP00000006016	BCL2 interacting protein 1.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.628
BNIP1	G1L2S8_AILME	ENSAMEP00000011895	ENSAMEP00000001188	BCL2 interacting protein 1.	Nbas_N domain-containing protein.	0.939
BNIP1	LOC100466252	ENSAMEP00000011895	ENSAMEP00000010771	BCL2 interacting protein 1.	Neuroblastoma amplified sequence.	0.939
BNIP1	NAPG	ENSAMEP00000011895	ENSAMEP00000008101	BCL2 interacting protein 1.	NSF attachment protein gamma.	0.796
BNIP1	RINT1	ENSAMEP00000011895	ENSAMEP00000013996	BCL2 interacting protein 1.	RAD50 interactor 1.	0.981
BNIP1	SCFD2	ENSAMEP00000011895	ENSAMEP00000008529	BCL2 interacting protein 1.	Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family.	0.940
BNIP1	SEC22B	ENSAMEP00000011895	ENSAMEP00000012350	BCL2 interacting protein 1.	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	0.987
BNIP1	STX18	ENSAMEP00000011895	ENSAMEP00000014430	BCL2 interacting protein 1.	Syntaxin 18.	0.998
BNIP1	USE1	ENSAMEP00000011895	ENSAMEP00000010882	BCL2 interacting protein 1.	Unconventional SNARE in the ER 1.	0.998
BNIP1	ZW10	ENSAMEP00000011895	ENSAMEP00000006429	BCL2 interacting protein 1.	Zw10 kinetochore protein.	0.949
COPB2	BNIP1	ENSAMEP00000006016	ENSAMEP00000011895	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	BCL2 interacting protein 1.	0.628
COPB2	G1L2S8_AILME	ENSAMEP00000006016	ENSAMEP00000001188	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Nbas_N domain-containing protein.	0.819
COPB2	LOC100466252	ENSAMEP00000006016	ENSAMEP00000010771	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Neuroblastoma amplified sequence.	0.819
COPB2	NAPG	ENSAMEP00000006016	ENSAMEP00000008101	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	NSF attachment protein gamma.	0.533
COPB2	RINT1	ENSAMEP00000006016	ENSAMEP00000013996	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	RAD50 interactor 1.	0.825
COPB2	SEC22B	ENSAMEP00000006016	ENSAMEP00000012350	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	0.712
COPB2	STX18	ENSAMEP00000006016	ENSAMEP00000014430	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Syntaxin 18.	0.805
COPB2	USE1	ENSAMEP00000006016	ENSAMEP00000010882	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Unconventional SNARE in the ER 1.	0.706
COPB2	ZW10	ENSAMEP00000006016	ENSAMEP00000006429	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Zw10 kinetochore protein.	0.921
G1L2S8_AILME	BNIP1	ENSAMEP00000001188	ENSAMEP00000011895	Nbas_N domain-containing protein.	BCL2 interacting protein 1.	0.939