Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RAB1ARAB1A, member RAS oncogene family. (205 aa)    
Predicted Functional Partners:
USO1
USO1 vesicle transport factor.
   
 0.898
STX5
Syntaxin 5; Belongs to the syntaxin family.
   
 0.876
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.854
GBF1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 0.839
TMED10
Transmembrane p24 trafficking protein 10.
   
 0.839
TBC1D20
TBC1 domain family member 20.
    
 0.828
TRAPPC8
Trafficking protein particle complex 8.
    
 0.827
BET1
Bet1 golgi vesicular membrane trafficking protein.
    
 0.827
C9orf72
C9orf72-SMCR8 complex subunit.
    
 0.823
GOLGA2
Uncharacterized protein.
    
 0.823
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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