STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2orf16Chromosome 2 open reading frame 16. (1780 aa)    
Predicted Functional Partners:
SNW1
SNW domain containing 1.
    
 0.585
PRPF19
Pre-mRNA processing factor 19.
    
 0.585
XAB2
XPA binding protein 2.
   
 0.585
NUP107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.584
NUP155
Nucleoporin 155.
   
 0.553
RANGAP1
Ran GTPase activating protein 1.
   
 0.552
NUP88
Nucleoporin 88.
    
 0.540
NUP214
Nucleoporin 214.
    
 0.530
NUP85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.523
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
   
 0.522
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.