FHL3 protein (Ailuropoda melanoleuca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FHL3

Four and a half LIM domains 3. (280 aa)

Predicted Functional Partners:

KLF3

0.556

COPS5

0.512

QDPR

0.503

RND1

0.486

RFX2

0.475

WIPF2

0.468

RHOG

0.446

PANDA_019199

0.446

CCNDBP1

0.445

PER1

0.438

Your Current Organism:

Ailuropoda melanoleuca

NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCNDBP1	FHL3	ENSAMEP00000016505	ENSAMEP00000001363	Cyclin D1 binding protein 1.	Four and a half LIM domains 3.	0.445
COPS5	FHL3	ENSAMEP00000013219	ENSAMEP00000001363	COP9 signalosome subunit 5.	Four and a half LIM domains 3.	0.512
FHL3	CCNDBP1	ENSAMEP00000001363	ENSAMEP00000016505	Four and a half LIM domains 3.	Cyclin D1 binding protein 1.	0.445
FHL3	COPS5	ENSAMEP00000001363	ENSAMEP00000013219	Four and a half LIM domains 3.	COP9 signalosome subunit 5.	0.512
FHL3	KLF3	ENSAMEP00000001363	ENSAMEP00000010563	Four and a half LIM domains 3.	Kruppel like factor 3.	0.556
FHL3	PANDA_019199	ENSAMEP00000001363	ENSAMEP00000020649	Four and a half LIM domains 3.	Uncharacterized protein.	0.446
FHL3	PER1	ENSAMEP00000001363	ENSAMEP00000002835	Four and a half LIM domains 3.	Period circadian regulator 1.	0.438
FHL3	QDPR	ENSAMEP00000001363	ENSAMEP00000001816	Four and a half LIM domains 3.	Quinoid dihydropteridine reductase.	0.503
FHL3	RFX2	ENSAMEP00000001363	ENSAMEP00000008224	Four and a half LIM domains 3.	Regulatory factor X2.	0.475
FHL3	RHOG	ENSAMEP00000001363	ENSAMEP00000020570	Four and a half LIM domains 3.	Ras homolog family member G.	0.446
FHL3	RND1	ENSAMEP00000001363	ENSAMEP00000007485	Four and a half LIM domains 3.	Rho family GTPase 1.	0.486
FHL3	WIPF2	ENSAMEP00000001363	ENSAMEP00000008277	Four and a half LIM domains 3.	WAS/WASL interacting protein family member 2.	0.468
KLF3	FHL3	ENSAMEP00000010563	ENSAMEP00000001363	Kruppel like factor 3.	Four and a half LIM domains 3.	0.556
PANDA_019199	FHL3	ENSAMEP00000020649	ENSAMEP00000001363	Uncharacterized protein.	Four and a half LIM domains 3.	0.446
PANDA_019199	RHOG	ENSAMEP00000020649	ENSAMEP00000020570	Uncharacterized protein.	Ras homolog family member G.	0.901
PANDA_019199	RND1	ENSAMEP00000020649	ENSAMEP00000007485	Uncharacterized protein.	Rho family GTPase 1.	0.447
PER1	FHL3	ENSAMEP00000002835	ENSAMEP00000001363	Period circadian regulator 1.	Four and a half LIM domains 3.	0.438
QDPR	FHL3	ENSAMEP00000001816	ENSAMEP00000001363	Quinoid dihydropteridine reductase.	Four and a half LIM domains 3.	0.503
RFX2	FHL3	ENSAMEP00000008224	ENSAMEP00000001363	Regulatory factor X2.	Four and a half LIM domains 3.	0.475
RHOG	FHL3	ENSAMEP00000020570	ENSAMEP00000001363	Ras homolog family member G.	Four and a half LIM domains 3.	0.446