STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF6PHD finger protein 6. (365 aa)    
Predicted Functional Partners:
PLAC1
Placenta enriched 1.
      
 0.657
LYAR
Ly1 antibody reactive.
   
 
 0.654
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
   
 0.608
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.590
KDM6A
Lysine demethylase 6A.
   
 0.588
G1LA80_AILME
WD_REPEATS_REGION domain-containing protein.
   
 0.570
RBBP4
WD_REPEATS_REGION domain-containing protein.
   
 0.570
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.556
SUZ12
SUZ12 polycomb repressive complex 2 subunit.
   
 0.555
NLGN4X
COesterase domain-containing protein.
   
 
 0.554
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.