STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL11A1Collagen type XI alpha 1 chain. (1818 aa)    
Predicted Functional Partners:
COL5A2
Collagen type V alpha 2 chain.
  
0.863
COL1A2
Collagen type I alpha 2 chain.
  
0.697
COL2A1
Collagen type II alpha 1 chain.
  
0.689
COL3A1
Collagen type III alpha 1 chain.
  
 
0.635
COL1A1
Collagen type I alpha 1 chain.
  
0.530
COL27A1
Collagen type XXVII alpha 1 chain.
  
  
0.508
LUM
Lumican.
   
 0.480
PCOLCE
Procollagen C-endopeptidase enhancer.
   
 0.445
OLFM2
Olfactomedin 2.
      
 0.437
COL6A2
Collagen type VI alpha 2 chain.
   
0.428
Your Current Organism:
Ailuropoda melanoleuca
NCBI taxonomy Id: 9646
Other names: A. melanoleuca, giant panda
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